PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30142_BGI-A2_v1.0
Common NameF383_28343
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 488aa    MW: 54571.3 Da    PI: 7.9767
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30142_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-15157206155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++grW+++I+d      + k+++lg f+ +  Aa+a+++a+ k++g
  Cotton_A_30142_BGI-A2_v1.0 157 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDAPHAAARAYDRAAIKFRG 206
                                 78*******************......55************************997 PP

2AP244.15.1e-14249299155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV+ +k  grW+A++  +     +k+++lg f+t+ eAa+a+++a+ k +g
  Cotton_A_30142_BGI-A2_v1.0 249 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 299
                                 89********.7******5553..1.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-8157206IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15157215IPR016177DNA-binding domain
SMARTSM003808.0E-30158220IPR001471AP2/ERF domain
PROSITE profilePS5103217.148158214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-16158214IPR001471AP2/ERF domain
CDDcd000184.26E-11158213No hitNo description
SuperFamilySSF541714.64E-17249309IPR016177DNA-binding domain
PfamPF008471.7E-9249299IPR001471AP2/ERF domain
CDDcd000181.17E-24249309No hitNo description
SMARTSM003802.1E-30250313IPR001471AP2/ERF domain
PROSITE profilePS5103215.672250307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-16250307IPR001471AP2/ERF domain
PRINTSPR003675.8E-6251262IPR001471AP2/ERF domain
PRINTSPR003675.8E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MWDLNDCPYK ARDDEYEGCS TQRTSKYGDA GNCKRFGSMS NSCSSAVVIE DGSEEEEEDR  60
EGVKTALKKK GSKIFGFSVP YDEEESMESS DPTPVTRQLF PLDEDQEMRT GTGPGFPRAH  120
WVGIKFRQSE PYVCGGKSVE SSGPMKKSRR GPRSRSSQYR GVTYYRRTGR WESHIWDCGK  180
QVYLGGFDAP HAAARAYDRA AIKFRGVEAD INFSVEDYEE DLKQMRNLTK EEFVHVLRRQ  240
STGFPRGSSK YRGVTLHKCG RWEARLGQFL GKKYVYLGLF DTEIEAARAY DKAAIKCNGK  300
DAVTNFDPSI YGNELNNGGE TSGNAGGGHN LDLSLGNSVS KQNNPESGPP QTDWRYQGFK  360
PEEIQQQEQA CRGDDPHRRS DKHIHSPLSI KSNEMQIYGQ LRRPGPGENY MSHILPPRII  420
NPSIYQIHIA SNSGNGVQIG SDVSLSRSAQ QGPHQLIANA GAASSGFPTQ TWQQRNGFHS  480
FITPSRHF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456588.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_012456587.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-122AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0B0MUH40.0A0A0B0MUH4_G
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-101AP2 family protein